OrderedList: Similarities of Ordered Gene Lists

Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.

AuthorXinan Yang, Stefanie Scheid, Claudio Lottaz
Date of publicationNone
MaintainerClaudio Lottaz <Claudio.Lottaz@klinik.uni-regensburg.de>
LicenseGPL (>= 2)
Version1.46.0
http://compdiag.molgen.mpg.de/software/index.shtml

View on Bioconductor

Files in this package

OrderedList/DESCRIPTION
OrderedList/NAMESPACE
OrderedList/R
OrderedList/R/OrderedList.R OrderedList/R/a.R OrderedList/R/compareLists.R OrderedList/R/getOverlap.R OrderedList/R/plot.OrderedList.R OrderedList/R/prepareData.R OrderedList/R/print.OrderedList.R
OrderedList/build
OrderedList/build/vignette.rds
OrderedList/data
OrderedList/data/OL.data.rda
OrderedList/data/OL.result.rda
OrderedList/inst
OrderedList/inst/R-script
OrderedList/inst/R-script/makedata.R
OrderedList/inst/doc
OrderedList/inst/doc/tr_2006_01.R
OrderedList/inst/doc/tr_2006_01.Rnw
OrderedList/inst/doc/tr_2006_01.pdf
OrderedList/man
OrderedList/man/OL.data.Rd OrderedList/man/OL.result.Rd OrderedList/man/OrderedList.Rd OrderedList/man/check.test.args.Rd OrderedList/man/compareLists.Rd OrderedList/man/getOverlap.Rd OrderedList/man/overlap.Rd OrderedList/man/plot.OrderedList.Rd OrderedList/man/prepareData.Rd OrderedList/man/preparePermutations.Rd OrderedList/man/print.OrderedList.Rd OrderedList/man/scoreOrderComparison.Rd OrderedList/man/scoreRankings.Rd OrderedList/man/shuffledRandomScores.Rd
OrderedList/vignettes
OrderedList/vignettes/MPIMG_logo.png
OrderedList/vignettes/Makefile
OrderedList/vignettes/bcb_logo.pdf
OrderedList/vignettes/compdiag.sty
OrderedList/vignettes/tr_2006_01.Rnw

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