preparePermutations: Prepare Permutation and Subsetting Matrices

In OrderedList: Similarities of Ordered Gene Lists

Description

For a dataset specified with matrix and class labels, draws permutations and subsets.

Usage

preparePermutations(ids, paired, B, sample.ratio = 0.8)

Arguments

ids	class labels
paired	logical, whether samples in classes are paired.
B	number of permutations and subsets to be drawn.
sample.ratio	how many of the samples in a class are to be subsampled.

Value

Returns a list with the following items:

yperm	the matrix of permutations.
ysubs	the matrix of subsamplings.

Author(s)

Claudio Lottaz

OrderedList documentation built on Nov. 8, 2020, 5:41 p.m.