NP_Order: Taxa importance ordering by the number of occurrences of the...
In PERFect: Permutation filtration for microbiome data

Description Usage Arguments Value Author(s) References Examples

Taxa importance ordering by the number of occurrences of the taxa in the n samples

1	NP_Order(Counts)

Counts

OTU COUNTS table, where taxa are columns and samples are rows of the table. It should be a in data frame format with columns corresponding to taxa names.

NP Taxa names in increasing order of the number of samples taxa are present in.

Ekaterina Smirnova

Smirnova, E., Huzurbazar, H., Jafari, F. “PERFect: permutation filtration of microbiome data", to be submitted.

data(mock2)
# Proportion data matrix
Prop <- mock2$Prop

# Counts data matrix
Counts <- mock2$Counts

#arrange counts in order of increasing number of samples taxa are present in
NP <- NP_Order(Counts)