GenomicAnnotations2GenomicAnnotationsForPREDA: generate a GenomicAnnotationsForPREDA object from a...

Description Usage Arguments Value Author(s) See Also Examples

Description

generate a new GenomicAnnotationsForPREDA object from a GenomicAnnotations object

Usage

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# GenomicAnnotations2GenomicAnnotationsForPREDA(.Object,
# positions=NULL, reference_position_type=NULL)

GenomicAnnotations2GenomicAnnotationsForPREDA(.Object,
... )

Arguments

.Object

An object of class GenomicAnnotations

...

See below

positions:

Vector to specify reference positions for GenomicAnnotationsForPREDA object if not specified with reference_position_type parameter

reference_position_type:

Specify which genomic coordinate must be used as reference position for PREDA analysis. Possible values are "start", "end", "median", "strand.start" or "strand.end".

"strand.start" is strand specific start: i.e. start on positive strand but end on negative strand. "strand.end" is strand specific end.

Value

A GenomicAnnotationsForPREDA object

Author(s)

Francesco Ferrari

See Also

GenomicAnnotationsForPREDA

Examples

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 ## Not run: 
 
GEGenomicAnnotations<-GenomicAnnotationsFromLibrary(annotLibrary
= "org.Hs.eg.db", retain.chrs=1:22)

  GEGenomicAnnotationsForPREDA<-
  GenomicAnnotations2GenomicAnnotationsForPREDA(
  GEGenomicAnnotations, reference_position_type="median")

  
## End(Not run)

PREDA documentation built on May 6, 2019, 2:07 a.m.