GenomicRegionsComparison: compare GenomicRegions objects to identify overlaps and...
In PREDA: Position Related Data Analysis
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Description
compare GenomicRegions objects to identify overlaps and differences
Usage
1
GenomicRegionsComparison(.Object1, .Object2)
Arguments
.Object1
An object of Class GenomicRegions
.Object2
An object of Class GenomicRegions
Details
Compare GenomicRegions objects to identify overlaps and differences
Value
A list containing:
overlapping.regions
GenomicRegions object describing
the overlapping regions between input object1 and object2
difference.1.2
GenomicRegions object describing the
regions from input object1 not overlapping regions from object2
difference.2.1
GenomicRegions object describing the
regions from input object2 not overlapping regions from object1
GenomicRegions1.number
Number of genomic regions in input object1
GenomicRegions2.number
Number of genomic regions in input object2
overlapping.number
Number of overlapping genomic
regions between input object1 and object2
GenomicRegions1.totalspan
Total span of genomic regions in input object1
GenomicRegions2.totalspan
Total span of genomic regions in input object2
overlapping.totalspan
Total span of overlapping genomic
regions between input object1 and object2
overlap.VS.GenomicRegions1.ratio
Ratio between overlapping
regions and regions from input object1
overlap.VS.GenomicRegions2.ratio
Ratio between overlapping
regions and regions from input object2
Author(s)
Francesco Ferrari
See Also
GenomicRegionsFindOverlap,
GenomicRegions
PREDA documentation built on Nov. 8, 2020, 7:40 p.m.
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Description Usage Arguments Details Value Author(s) See Also
Description
compare GenomicRegions objects to identify overlaps and differences
Usage
1 | GenomicRegionsComparison(.Object1, .Object2)
|
Arguments
.Object1 |
An object of Class GenomicRegions |
.Object2 |
An object of Class GenomicRegions |
Details
Compare GenomicRegions objects to identify overlaps and differences
Value
A list containing:
overlapping.regions |
GenomicRegions object describing the overlapping regions between input object1 and object2 |
difference.1.2 |
GenomicRegions object describing the regions from input object1 not overlapping regions from object2 |
difference.2.1 |
GenomicRegions object describing the regions from input object2 not overlapping regions from object1 |
GenomicRegions1.number |
Number of genomic regions in input object1 |
GenomicRegions2.number |
Number of genomic regions in input object2 |
overlapping.number |
Number of overlapping genomic regions between input object1 and object2 |
GenomicRegions1.totalspan |
Total span of genomic regions in input object1 |
GenomicRegions2.totalspan |
Total span of genomic regions in input object2 |
overlapping.totalspan |
Total span of overlapping genomic regions between input object1 and object2 |
overlap.VS.GenomicRegions1.ratio |
Ratio between overlapping regions and regions from input object1 |
overlap.VS.GenomicRegions2.ratio |
Ratio between overlapping regions and regions from input object2 |
Author(s)
Francesco Ferrari
See Also
GenomicRegionsFindOverlap,
GenomicRegions
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