PREDAResultsGetObservedFlags: extract genomic positions with significant alterations as a...

In PREDA: Position Related Data Analysis

Description

extract genomic positions with significant alterations as a matrix of flags from a PREDAResults object

Usage

# PREDAResultsGetObservedFlags(.Object, qval.threshold=0.05,
# smoothStatistic.tail=NULL, smoothStatistic.threshold=NULL,
# null.value=0, significant.value=1)

PREDAResultsGetObservedFlags(.Object, ...)

Arguments

.Object

An object of class PREDAResults or PREDADataAndResults

...

See below qval.threshold: q-value threshold used to identify significant genomic positions smoothStatistic.tail: Possible values are "upper" or "lower". This parameter specify if only one tail of the smoothed statististic distribution must be considered. If it is NULL, both tails are used and smoothStatistic.threshold is ignored. smoothStatistic.threshold: Threshold on smoothStatistic values to select significant genomic regions. null.value: Value (flag) assigned to not significant positions significant.value: Value (flag) assigned to significant positions

PREDA documentation built on Nov. 8, 2020, 7:40 p.m.