GenomicAnnotations2reference_positions: extract reference positions from the GenomicAnnotations

In PREDA: Position Related Data Analysis

Description

extract from the GenomicAnnotations object a vector containing a vector with reference positions

Usage

# GenomicAnnotations2reference_positions(.Object,
# reference_position_type=c("start", "end", "median", "strand.start", "strand.end"),
# withnames=TRUE)

GenomicAnnotations2reference_positions(.Object, ...)

Arguments

.Object

Object of class GenomicAnnotations

...

See below reference_position_type: Specify which genomic coordinate must be used as reference position for PREDA analysis. Possible values are "start", "end", "median", "strand.start" or "strand.end". "strand.start" is strand specific start: i.e. start on positive strand but end on negative strand. "strand.end" is strand specific end. withnames: Logical, if TRUE the "ids" slot content is used as names for the output vector

Value

A numeric vector with the selected reference positions.

PREDA documentation built on Nov. 8, 2020, 7:40 p.m.