Files in Pigengene

Infers biological signatures from gene expression data

R/draw.scores.R R/save.if.R R/dummyMaker.R R/bn.calculationS.R R/compact.tree.R R/bn.module.R R/draw.bnS.R R/draw.cor.R R/hu.mouse.R R/versrem.R R/get.module.data.file.R R/indFileName.R R/make.membership.queue.R R/get.combined.file.R R/combine.networks.R R/rename.nodes.R R/noise.analysis.R R/unique.gene.names.R R/check.nas.R R/draw.module.sizes.R R/draw.cor.cond.R R/welch.pvalue.R R/sample.network.R R/combinedPath.R R/get.sorted.members.R R/get.genes.R R/module.heatmap.R R/pvalues.manova.R R/wgcna.one.step.R R/gene.mapping.R R/check.pigengene.input.R R/project.eigen.R R/make.decision.tree.R R/get.fitted.leaf.R R/message.if.R R/getALLRuns.R R/what.is.in.R R/balance.R R/add.noise.R R/make.bn.input.R R/dcor.matrix.R R/learn.bn.R R/which.cluster.R R/consensus.R R/enforce.blk.R R/draw.improvement.R R/scoreCandidates.R R/combinedStrength.R R/calculate.beta.R R/preds.at.R R/get.consensus.files.R R/one.step.pigengene.R R/getBN.R R/load.if.R R/sbatch.R R/repeat.data.R R/consensus.thresh.R R/get.used.features.R R/bn.calculation.R R/draw.bn.R R/pheatmap.type.R R/compute.pigengene.R R/mtrim.R R/plot.pigengene.R man/save.if.Rd man/one.step.pigengene.Rd man/pvalues.manova.Rd man/learn.bn.Rd man/balance.Rd man/check.nas.Rd man/Pigengene-package.Rd man/dcor.matrix.Rd man/message.if.Rd man/check.pigengene.input.Rd man/pigengene-class.Rd man/wgcna.one.step.Rd man/project.eigen.Rd man/get.used.features.Rd man/module.heatmap.Rd man/pheatmap.type.Rd man/get.fitted.leaf.Rd man/combine.networks.Rd man/calculate.beta.Rd man/make.decision.tree.Rd man/pigengene.Rd man/preds.at.Rd man/plot.pigengene.Rd man/gene.mapping.Rd man/compact.tree.Rd man/get.genes.Rd man/eigengenes33.Rd man/draw.bn.Rd man/compute.pigengene.Rd man/aml.Rd man/mds.Rd inst/doc/Pigengene_inference.pdf inst/doc/Pigengene_inference.R