Files in Pigengene
Infers biological signatures from gene expression data
NAMESPACE
DESCRIPTION
build/vignette.rds
data/aml.RData
data/eigengenes33.RData
data/datalist
data/pigengene.RData
data/mds.RData
R/draw.scores.R
R/save.if.R
R/dummyMaker.R
R/bn.calculationS.R
R/compact.tree.R
R/bn.module.R
R/draw.bnS.R
R/draw.cor.R
R/hu.mouse.R
R/versrem.R
R/get.module.data.file.R
R/indFileName.R
R/make.membership.queue.R
R/get.combined.file.R
R/combine.networks.R
R/rename.nodes.R
R/noise.analysis.R
R/unique.gene.names.R
R/check.nas.R
R/draw.module.sizes.R
R/draw.cor.cond.R
R/welch.pvalue.R
R/sample.network.R
R/combinedPath.R
R/get.sorted.members.R
R/get.genes.R
R/module.heatmap.R
R/pvalues.manova.R
R/wgcna.one.step.R
R/gene.mapping.R
R/check.pigengene.input.R
R/project.eigen.R
R/make.decision.tree.R
R/get.fitted.leaf.R
R/message.if.R
R/getALLRuns.R
R/what.is.in.R
R/balance.R
R/add.noise.R
R/make.bn.input.R
R/dcor.matrix.R
R/learn.bn.R
R/which.cluster.R
R/consensus.R
R/enforce.blk.R
R/draw.improvement.R
R/scoreCandidates.R
R/combinedStrength.R
R/calculate.beta.R
R/preds.at.R
R/get.consensus.files.R
R/one.step.pigengene.R
R/getBN.R
R/load.if.R
R/sbatch.R
R/repeat.data.R
R/consensus.thresh.R
R/get.used.features.R
R/bn.calculation.R
R/draw.bn.R
R/pheatmap.type.R
R/compute.pigengene.R
R/mtrim.R
R/plot.pigengene.R
vignettes/Pigengene_inference.Rnw
vignettes/pigengene.bib
man/save.if.Rd
man/one.step.pigengene.Rd
man/pvalues.manova.Rd
man/learn.bn.Rd
man/balance.Rd
man/check.nas.Rd
man/Pigengene-package.Rd
man/dcor.matrix.Rd
man/message.if.Rd
man/check.pigengene.input.Rd
man/pigengene-class.Rd
man/wgcna.one.step.Rd
man/project.eigen.Rd
man/get.used.features.Rd
man/module.heatmap.Rd
man/pheatmap.type.Rd
man/get.fitted.leaf.Rd
man/combine.networks.Rd
man/calculate.beta.Rd
man/make.decision.tree.Rd
man/pigengene.Rd
man/preds.at.Rd
man/plot.pigengene.Rd
man/gene.mapping.Rd
man/compact.tree.Rd
man/get.genes.Rd
man/eigengenes33.Rd
man/draw.bn.Rd
man/compute.pigengene.Rd
man/aml.Rd
man/mds.Rd
inst/NEWS.Rd
inst/CITATION
inst/doc/Pigengene_inference.Rnw
inst/doc/Pigengene_inference.pdf
inst/doc/Pigengene_inference.R
