match_matrix_dimensions: Match the dimensions of a query matrix to a profile matrix

In PrInCE: Predicting Interactomes from Co-Elution

Description

Match the row and column names of a square feature matrix to the row names of a profile matrix, adding rows/columns containing NAs when proteins in the profile matrix are missing from the feature matrix.

Usage

match_matrix_dimensions(query, profile_matrix)

Arguments

query	a square matrix containing features for pairs of proteins
profile_matrix	the profile matrix for which interactions are being predicted

Value

a square matrix with the same row and column names as the input profile matrix, for use in interaction prediction

Examples

data(gold_standard)
subset <- adjacency_matrix_from_list(gold_standard[seq(1, 200)])
target <- adjacency_matrix_from_list(gold_standard)
matched <- match_matrix_dimensions(subset, target)
dim(subset)
dim(target)
dim(matched)

PrInCE documentation built on Nov. 8, 2020, 6:34 p.m.