getFisherMatrix: getFisherMatrix

In ProCoNA: Protein co-expression network analysis (ProCoNA).

Description

Fisher's exact test pairwise on modules.

Usage

getFisherMatrix(peps1, peps2, colors1, colors2)

Arguments

peps1	Names of entities in the network (nodes of network 1)
peps2	Names of entities in the network (nodes of network 2)
colors1	the module assignments for network 1
colors2	the module assignments for network 2

Value

Returns the fisher test pvalues and count of overlapping peptides.

Author(s)

David L Gibbs

Examples

data(ProCoNA_Data)
#net1 <- buildProconaNetwork("peptide network", peptideData, pow=12)
#net2 <- buildProconaNetwork("peptide network", peptideData + 0.3*rnorm(length(peptideData)), pow=12)
getFisherMatrix(peptides(net1), peptides(net2), mergedColors(net1), mergedColors(net2))

ProCoNA documentation built on Nov. 1, 2018, 3:28 a.m.