toPermTest: toPermTest

In ProCoNA: Protein co-expression network analysis (ProCoNA).

Description

Uses the procona network object, the data with peptides as columns, samples in rows. And the power that the net was built at the number of permutations to do... Modules are permuted and mean topological overlap is recorded, constructing the null. The number of random permutations with mean TO greater than observed provides the p-value.

Usage

toPermTest(pnet, numPermutes)

Arguments

pnet	ProCoNA network object.
numPermutes	The number of permutations to perform

Value

returns the network obj with the perm test

Author(s)

David L Gibbs

Examples

data(ProCoNA_Data)
#net1 <- buildProconaNetwork("peptide network", peptideData, pow=12)
toPermTest(net1, 100)

ProCoNA documentation built on Nov. 1, 2018, 3:28 a.m.