ProCoNA: Protein co-expression network analysis (ProCoNA).

Protein co-expression network construction using peptide level data, with statisical analysis. (Journal of Clinical Bioinformatics 2013, 3:11 doi:10.1186/2043-9113-3-11)

AuthorDavid L Gibbs
Date of publicationNone
MaintainerDavid L Gibbs <gibbsd@ohsu.edu>
LicenseGPL (>= 2)
Version1.12.0

View on Bioconductor

Files in this package

ProCoNA/DESCRIPTION
ProCoNA/NAMESPACE
ProCoNA/NEWS
ProCoNA/R
ProCoNA/R/allClasses.R ProCoNA/R/bootstrapNetwork.R ProCoNA/R/buildNetwork.R ProCoNA/R/conv.R ProCoNA/R/dataSubset.R ProCoNA/R/errorChecking.R ProCoNA/R/matrixUtils.R ProCoNA/R/moduleMemberStats.R ProCoNA/R/netComparison.R ProCoNA/R/pepPlots.R ProCoNA/R/proconaNet_accessors.R ProCoNA/R/statTests.R
ProCoNA/README
ProCoNA/TODO
ProCoNA/build
ProCoNA/build/vignette.rds
ProCoNA/data
ProCoNA/data/ProCoNA_Data.rda
ProCoNA/data/datalist
ProCoNA/inst
ProCoNA/inst/doc
ProCoNA/inst/doc/ProCoNA_Vignette.R
ProCoNA/inst/doc/ProCoNA_Vignette.Rnw
ProCoNA/inst/doc/ProCoNA_Vignette.pdf
ProCoNA/inst/sample_script
ProCoNA/inst/sample_script/procona_pipeline.R
ProCoNA/inst/unitTests
ProCoNA/inst/unitTests/test_peptideCorrelationTest.R
ProCoNA/inst/unitTests/test_ppiPermTest.R
ProCoNA/inst/unitTests/test_toPermTest.R
ProCoNA/man
ProCoNA/man/MMvsPS.Rd ProCoNA/man/MMvsPSallModules.Rd ProCoNA/man/ProCoNA_Data.Rd ProCoNA/man/accessors.Rd ProCoNA/man/bootstrapProconaNetwork.Rd ProCoNA/man/buildProconaNetwork.Rd ProCoNA/man/c2i.Rd ProCoNA/man/compareNetworksWithFishersExactTest.Rd ProCoNA/man/compareNetworksWithFishersExactTestProcona.Rd ProCoNA/man/corBootstrap.Rd ProCoNA/man/correlationWithPhenotypesHeatMap.Rd ProCoNA/man/getFisherMatrix.Rd ProCoNA/man/getPeptideNAs.Rd ProCoNA/man/goStatTest.Rd ProCoNA/man/hclust.Rd ProCoNA/man/i2c.Rd ProCoNA/man/i2col.Rd ProCoNA/man/moduleMemberCorrelations.Rd ProCoNA/man/modulePhenotypeCorrelations.Rd ProCoNA/man/orderMatrixIndex.Rd ProCoNA/man/peptideConnectivityTest.Rd ProCoNA/man/peptideCorrelationTest.Rd ProCoNA/man/plotNet.Rd ProCoNA/man/ppiPermTest.Rd ProCoNA/man/printNet.Rd ProCoNA/man/procona-package.Rd ProCoNA/man/proconaNet-class.Rd ProCoNA/man/proconaVersionFun.Rd ProCoNA/man/runningStats.Rd ProCoNA/man/subsetModCors.Rd ProCoNA/man/subsetPeptideData.Rd ProCoNA/man/toPermTest.Rd ProCoNA/man/utri.Rd
ProCoNA/tests
ProCoNA/tests/runTests.R
ProCoNA/vignettes
ProCoNA/vignettes/ProCoNA_Package_Blerb.docx
ProCoNA/vignettes/ProCoNA_Vignette.Rnw

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