Files in QSutils

Quasispecies Diversity

README.md R/ReportVariants.R R/GetQSData.R R/IntersectStrandHpls.R R/NucleotideDiversity.R R/Rao.R R/HCq.R R/FreqMat.R R/Renyi.R R/ConsSeq.R R/Diverge.R R/GiniSimpson.R R/Hill.R R/MutsTbl.R R/PolyDist.R R/DBrule.R R/CorrectGapsAndNs.R R/DNA.dist.R R/Collapse.R R/Shannon.R R/SummaryMuts.R R/GetInfProfile.R R/DottedAlignment.R R/GetRandomSeq.R R/Recollapse.R R/TotalMutations.R R/FAD.R R/fn.ab.R R/UniqueMutations.R R/ReadAmplSeqs.R R/SortByMutations.R R/MutationFreq.R R/DSFT.R R/geom.series.R R/SegSites.R R/GenerateVars.R vignettes/QSutils-Simulation.Rmd vignettes/QSutils-Diversity.Rmd vignettes/QSUtils-Alignment.Rmd man/DSFT.Rd man/GenotypeStandards_A-H.fas.Rd man/HCq.Rd man/GetInfProfile.Rd man/Unknown-Genotype.fna.Rd man/SortByMutations.Rd man/MutsTbl.Rd man/GiniSimpson.Rd man/fn.ab.Rd man/ToyData_FWReads.fna.Rd man/FreqMat.Rd man/UniqueMutations.Rd man/geom.series.Rd man/GenerateVars.Rd man/ToyData_RVReads.fna.Rd man/ConsSeq.Rd man/ReadAmplSeqs.Rd man/SegSites.Rd man/Rao.Rd man/QSutils-package.Rd man/IntersectStrandHpls.Rd man/Collapse.Rd man/GetRandomSeq.Rd man/FAD.Rd man/ReportVariants.Rd man/Shannon.Rd man/PolyDist.Rd man/Diverge.Rd man/SummaryMuts.Rd man/Hill.Rd man/CorrectGapsAndNs.Rd man/Renyi.Rd man/Toy.GapsAndNs.fna.Rd man/MutationFreq.Rd man/DottedAlignment.Rd man/TotalMutations.Rd man/ToyData_10_50_1000.fna.Rd man/DNA.dist.Rd man/GetQSData.Rd man/NucleotideDiversity.Rd man/DBrule.Rd inst/doc/QSutils-Diversity.R inst/doc/QSUtils-Alignment.R inst/doc/QSutils-Simulation.R inst/doc/QSutils-Simulation.Rmd inst/doc/QSutils-Diversity.Rmd inst/doc/QSUtils-Alignment.Rmd