Unknown-Genotype.fna: Fasta file with reads of unknown genotype
In QSutils: Quasispecies Diversity
Description
Format
See Also
Examples
Description
Fasta file with hepatitis B virus sequences of unknown genotype. This is used
to illustrate the genotyping of HBV sequences with the QSutils package.
Format
Fasta file format. Each sequence starts with the symbol ">" followed by
the sequence ID. Subsequent lines correspond to the nucleotide sequences or
peptide sequences.
See Also
Examples
1
2
3
4
filepath<-system.file("extdata","Unknown-Genotype.fna", package="QSutils")
lst2Geno <- ReadAmplSeqs(filepath,type="DNA")
hseq <- lst2Geno$hseq[1]
hseq
QSutils documentation built on Nov. 8, 2020, 7:42 p.m.
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Description Format See Also Examples
Description
Fasta file with hepatitis B virus sequences of unknown genotype. This is used
to illustrate the genotyping of HBV sequences with the QSutils package.
Format
Fasta file format. Each sequence starts with the symbol ">" followed by the sequence ID. Subsequent lines correspond to the nucleotide sequences or peptide sequences.
See Also
Examples
1 2 3 4 | filepath<-system.file("extdata","Unknown-Genotype.fna", package="QSutils")
lst2Geno <- ReadAmplSeqs(filepath,type="DNA")
hseq <- lst2Geno$hseq[1]
hseq
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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