ToyData_RVReads.fna: Fasta file with reverse reads.
In QSutils: Quasispecies Diversity
Description
Format
See Also
Examples
Description
Fasta file with reverse strand reads. Toy data used to illustrate the
intersections of forward and reverse haplotypes with the function
IntersectStrandHpls.
Format
Fasta file format. Each sequence starts with the symbol ">" followed by
the sequence ID. Subsequent lines correspond to the nucleotide sequences or
peptide sequences.
See Also
ToyData_FWReads.fna, IntersectStrandHpls
Examples
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filepath_FW<-system.file("extdata","ToyData_FWReads.fna", package="QSutils")
lstFW <- ReadAmplSeqs(filepath_FW,type="DNA")
filepath_RV<-system.file("extdata","ToyData_RVReads.fna", package="QSutils")
lstRV <- ReadAmplSeqs(filepath_RV,type="DNA")
lstI <- IntersectStrandHpls(lstFW$nr,lstFW$hseqs,lstRV$nr,lstRV$hseqs)
lstI
QSutils documentation built on Nov. 8, 2020, 7:42 p.m.
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Description Format See Also Examples
Description
Fasta file with reverse strand reads. Toy data used to illustrate the
intersections of forward and reverse haplotypes with the function
IntersectStrandHpls.
Format
Fasta file format. Each sequence starts with the symbol ">" followed by the sequence ID. Subsequent lines correspond to the nucleotide sequences or peptide sequences.
See Also
ToyData_FWReads.fna, IntersectStrandHpls
Examples
1 2 3 4 5 6 7 | filepath_FW<-system.file("extdata","ToyData_FWReads.fna", package="QSutils")
lstFW <- ReadAmplSeqs(filepath_FW,type="DNA")
filepath_RV<-system.file("extdata","ToyData_RVReads.fna", package="QSutils")
lstRV <- ReadAmplSeqs(filepath_RV,type="DNA")
lstI <- IntersectStrandHpls(lstFW$nr,lstFW$hseqs,lstRV$nr,lstRV$hseqs)
lstI
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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