Man pages for REDseq
Analysis of high-throughput sequencing data processed by restriction enzyme digestion
| assignSeq2REsite | Assign mapped sequence tags to corresponding restriction... |
| binom.test.REDseq | Binomial test for REDseq dataset |
| buildREmap | Build a genome wide cut site map for a Restriction Enzyme... |
| compareREDseq | Compare two RED Sequencing Dataset |
| distanceHistSeq2RE | Plot the distance distribution from sequence to the... |
| example.assignedREDseq | an example assigned REDseq dataset |
| example.map | an example REmap dataset |
| example.REDseq | an example sequencing dataset from a restoration enzyme... |
| plotCutDistribution | plot cut frequencies of RE sites along a given chromosome |
| REDseq-package | REDseq |
| searchPattern | search pattern(s) in a genome |
| summarizeByRE | Output count/weight summary by restriction enzyme cut site ID... |
| summarizeBySeq | Output count/weight summary by sequences |
| writeHits | write the hits of pattern search to a bed file |
