summarizeBySeq: Output count/weight summary by sequences
In REDseq: Analysis of high-throughput sequencing data processed by restriction enzyme digestion
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/summarizeBySeq.R
Description
Output count/weight summary by sequences with each row representing each sequences
Usage
1
summarizeBySeq(assignedSeqs, by =c("Weight", "SEQid"))
Arguments
assignedSeqs
output from assignSeq2REsite
by
Weight if sum up the weight for each sequence, SEQid if sum the occurrence of each sequence
Value
a matrix with SEQid as the first column and total count/weight as the second column
Author(s)
Lihua Julie Zhu
See Also
summarizeByRE, assignSeq2REsite
Examples
1
2
3
4
library(REDseq)
data(example.assignedREDseq)
summarizeBySeq(example.assignedREDseq, by="Weight")
summarizeBySeq(example.assignedREDseq,by="SEQid")
REDseq documentation built on Nov. 8, 2020, 8:19 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/summarizeBySeq.R
Description
Output count/weight summary by sequences with each row representing each sequences
Usage
1 | summarizeBySeq(assignedSeqs, by =c("Weight", "SEQid"))
|
Arguments
assignedSeqs |
output from assignSeq2REsite |
by |
Weight if sum up the weight for each sequence, SEQid if sum the occurrence of each sequence |
Value
a matrix with SEQid as the first column and total count/weight as the second column
Author(s)
Lihua Julie Zhu
See Also
summarizeByRE, assignSeq2REsite
Examples
1 2 3 4 | library(REDseq)
data(example.assignedREDseq)
summarizeBySeq(example.assignedREDseq, by="Weight")
summarizeBySeq(example.assignedREDseq,by="SEQid")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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