distanceHistSeq2RE: Plot the distance distribution from sequence to the...

In REDseq: Analysis of high-throughput sequencing data processed by restriction enzyme digestion

Description

Give an overview of the distance distribution from all assigned sequences to the associated RE sites. If average or estimate is used for assigning sequences to RE sites, the count for histogram drawing will be adjusted with the weight assigned.

Usage

distanceHistSeq2RE(assignedSeqs, longestDist = 1000, 
title = "histogram of distance to assigned RE site", 
xlab = "Distance to assigned RE site", ylab = "Frequency", ylim="")

Arguments

assignedSeqs	result returned from assignSeq2REsite
longestDist	longest distance to keep in the plot
title	an overall title for the plot
xlab	a title for the x axis
ylab	a title for the y axis
ylim	range of y to be plotted

Author(s)

Lihua Julie Zhu

See Also

assignSeq2REsite, distanceHistSeq2RE

Examples

library(REDseq)
data(example.assignedREDseq)
distanceHistSeq2RE(example.assignedREDseq,ylim=c(0,20))

REDseq documentation built on Nov. 8, 2020, 8:19 p.m.