summary.term_enrichment_by_subset: summary.term_enrichment_by_subset

Description Usage Arguments Value Examples

View source: R/lib_enrichment.R

Description

summary.term_enrichment_by_subset

Usage

1
2
## S3 method for class 'term_enrichment_by_subset'
summary(object, verbose = TRUE, ...)

Arguments

object

data frame returned by term_enrichment_by_subset()

verbose

if TRUE (default), print a header describing the data type

...

Further arguments are passed on to head()

Value

the data.frame of top enrichment results

Examples

1
2
3
4
5
require(RITANdata)
vac1.de.genes <- list(vac1.day0vs31.de.genes, vac1.day0vs56.de.genes)
names(vac1.de.genes) <- c("Day0vs31", "Day0vs56")
e <- term_enrichment_by_subset(vac1.de.genes, "MSigDB_Hallmarks", q_value_threshold = 0.1 )
summary(e)

RITAN documentation built on Nov. 8, 2020, 8:16 p.m.