R/Example_RPMs.R

In RNAdecay: Maximum Likelihood Decay Modeling of RNA Degradation Data

#' RNA abundance reads per million over RNA decay timecourse
#'
#' A dataset of RNA abundance of 118 genes in four Arabidopsis thaliana genotypes (WT, sov, vcs, vcs sov). Four biological replicates were collectred 0, 7.5, 15, 30, 60, 120, 240, 480 min after blocking transcription. RNA was extracted, subjected to ribodepletion, and sequenced by RNA-seq (Illumina 50 nt single end reads).
#'
#' @format a data frame with 118 rows and 128 columns; data are all RNA abundance values presented as reads per million. Column names indicate genotype, time point, and replicate number separated by underscores.
#'
#' @source Sorenson et al. (2017) Submitted; \url{https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE86361}
#'
"RPMs"