compareReplicaPlates: Compare replica plates

In RNAither: Statistical analysis of high-throughput RNAi screens

Description

Generates plots comparing the same plates in different experiments pairwise.

Usage

compareReplicaPlates(header, dataset, plotTitle, col4val, showPlot)

Arguments

header	the header of a dataset file generated with generateDatasetFile
dataset	an R data frame generated with generateDatasetFile
plotTitle	the plot title
col4val	a character string specifying the column whose values will be used for the plot
showPlot	0 or 1. 1 will open one or several plot windows in the R GUI, 0 will only save the plot(s) without opening windows

Value

For each plate, plots of pairwise comparisons between replicate intensities are generated and saved as a pdf file named after the experiment name specified in the header concatenated with the plotTitle .

See Also

compareReplicates

Examples

data(exampleHeader, package="RNAither")
data(exampleDataset, package="RNAither")

compareReplicaPlates(header, dataset, "Comparison of replica plate", "SigIntensity", 1)

RNAither documentation built on Nov. 8, 2020, 8:06 p.m.