norm_df2GR: Function to convert norm_df data frame (product of...
In RNAprobR: An R package for analysis of massive parallel sequencing based RNA structure probing data

Function to convert norm_df data frame (product of GR2norm_df()) to GRanges.

1	norm_df2GR(norm_df)

norm_df

norm_df data frame needs to have columns: RNAid (equivalent to seqnames in GRanges) and Pos (equivalent to start in GRanges) and metadata

GRanges compatible with objects created by normalizing functions (dtcr(), slograt(), swinsor(), compdata())

Lukasz Jan Kielpinski

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dummy_norm_df <- data.frame(RNAid="dummyRNA", Pos=1:100,
                            my_data1=runif(1:100))
norm_df2GR(dummy_norm_df)

RNAprobR documentation built on Nov. 8, 2020, 5:57 p.m.

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