Description Usage Arguments Value Author(s) See Also Examples
Function plotting normalized values over transcript positions.
1 2 
norm_GR 
norm_GR GRanges with data to be exported, required 
RNAid 
Transcript identifier, for which transcript plot should be generated. 
norm_method 
Which normalization method should be to be used for plotting (column name). 
stat_method 
Name of a column to be used for adding significance asterisks. If stat_method not provided, function tries to match with "norm_method", if no guess  empty vector. 
stat_cutoff 
below what value of statistics (from stat_method, pvalue or standard deviation) report significance. If not provided  minimal value from stat_method used. To suppress reporting significant sites provide negative value 
main 
an overall title for the plot: see 
type 
what type of plot should be drawn. See 
ylab 
a title for the y axis: see 
xlab 
a title for the x axis: see 
... 
Arguments to be passed to methods, such as

Plotting function.
Lukasz Jan Kielpinski
plot
, plot.default
, dtcr
,
slograt
, swinsor
, compdata
1 2 3 4 5 6 7  dummy_euc_GR_treated < GRanges(seqnames="DummyRNA",
IRanges(start=round(runif(100)*100),
width=round(runif(100)*100+1)), strand="+",
EUC=round(runif(100)*100))
dummy_comp_GR_treated < comp(dummy_euc_GR_treated)
dummy_swinsor < swinsor(dummy_comp_GR_treated)
plotRNA(dummy_swinsor, RNAid="DummyRNA")

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