Man pages for ROntoTools
R Onto-Tools suite
| alpha1MR | Compute alpha weights |
| alphaMLG | Compute alpha weights |
| compute.fisher | Combine independent p-values using the Fisher method |
| compute.normalInv | Combine independent p-values using the normal inversion... |
| KEGGpathway2Graph | Modified version of the same function from KEGGgraph |
| keggPathwayGraphs | Download and parse KEGG pathway data |
| keggPathwayNames | Obtain KEGG pathway titles |
| nodeWeights | Retrieve the node weights of a graph |
| pDis | Primary dis-regulation: Pathway analysis approach based on... |
| pDisPathway-class | Class that encodes the result of pDis analysis for a single... |
| pDisRes-class | Primary dis-regulation (pDis) result class |
| pe | Pathway-Express: Pathway analysis of signaling pathways |
| peEdgeRenderInfo | Extract edge render information from a 'pePathway-class'... |
| peNodeRenderInfo | Extract node render information from a 'pePathway-class'... |
| pePathway-class | Class that encodes the result of Pathway-Express for a single... |
| peRes-class | Pathway-Express result class |
| plot.pePathway-methods | Plot pathway level statistics |
| plot.peRes-methods | Plot Pathway-Express result |
| setEdgeWeights | Set gene weights based on edge type |
| setNodeWeights | Set node weights |
| subGraphByNodeType | Modified version of the same function from KEGGgraph |
| summary.pDisRes | Summarize the results of a primary dis-regulation (pDis)... |
| Summary-pDisRes-method | Summarize the results of a Pathway-Express analysis |
| summary.peRes | Summarize the results of a Pathway-Express analysis |
| Summary-peRes-method | Summarize the results of a Pathway-Express analysis |
