keggPathwayNames: Obtain KEGG pathway titles
In ROntoTools: R Onto-Tools suite
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Obtain KEGG pathway titles
Usage
1
keggPathwayNames(organism = "hsa", updateCache = FALSE, verbose = TRUE)
Arguments
organism
organism code as defined by KEGG
updateCache
re-download KEGG data
verbose
show progress of downloading and parsing
Value
A named vector of pathway titles. The names of the vector are the pathway KEGG IDs.
Author(s)
Calin Voichita and Sorin Draghici
See Also
Examples
1
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3
4
5
6
7
kpn <- keggPathwayNames("hsa")
# to update the pathway cache for human run:
# kpn <- keggPathwayNames("hsa", updateCache = TRUE)
# this is time consuming and depends on the available bandwidth.
head(kpn)
ROntoTools documentation built on Nov. 8, 2020, 7:41 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Obtain KEGG pathway titles
Usage
1 | keggPathwayNames(organism = "hsa", updateCache = FALSE, verbose = TRUE)
|
Arguments
organism |
organism code as defined by KEGG |
updateCache |
re-download KEGG data |
verbose |
show progress of downloading and parsing |
Value
A named vector of pathway titles. The names of the vector are the pathway KEGG IDs.
Author(s)
Calin Voichita and Sorin Draghici
See Also
Examples
1 2 3 4 5 6 7 | kpn <- keggPathwayNames("hsa")
# to update the pathway cache for human run:
# kpn <- keggPathwayNames("hsa", updateCache = TRUE)
# this is time consuming and depends on the available bandwidth.
head(kpn)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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