peRes-class: Pathway-Express result class
In ROntoTools: R Onto-Tools suite

Description Details Slots Author(s) See Also

This class is used to encode the results of the pathway analysis performed by the function pe.

The slots input and ref record global information related to the whole analysis, while the pathways slot records the specific results as pePathway-class for each one of the pathways used in the analysis.

pathways:: A list of pePathway-class objects.
input:: named vector of fold changes used for the analysis. The names of the vector are the IDs originaly used.
ref:: character vector containing the IDs used as reference in the analysis.
cutOffFree:: boolean value indicating if a cut-of-free analysis has been performed.