pePathway-class: Class that encodes the result of Pathway-Express for a single...

In ROntoTools: R Onto-Tools suite

Description

Class that encodes the result of Pathway-Express for a single pathway

Slots

map:

an object of type graph (e.g., graphNEL).

input:

named vector of fold changes for genes on this pathway. The names of the genes are the orignal IDS used in the analysis

ref:

vector of reference IDs on this pathway

boot:

an object of class boot encoding the bootstrap information.

Pert:

the gene perturbation factors for all genes on the pathway, as computed by Pathway-Express.

Acc:

the gene accumulations for all genes on the pathway, as computed by Pathway-Express.

asGS:

pathway was considered as gene set

Author(s)

Calin Voichita and Sorin Draghici

See Also

pe, peRes-class

ROntoTools documentation built on Nov. 8, 2020, 7:41 p.m.