Files in SELEX

Functions for analyzing SELEX-seq data

.BBSoptions

NAMESPACE

DESCRIPTION

build/vignette.rds

java/src/selex.jar

java/src/Makefile

java/src/selex.xsd

java/src/config/DataSource.java

java/src/config/SequencingRunInfo.java

java/src/config/CrossValidation.java

java/src/config/SELEXPipeline.java

java/src/config/ExperimentReference.java

java/src/config/MarkovModelStats.java

java/src/config/Sample.java

java/src/config/InformationGain.java

java/src/config/Process.java

java/src/config/AdditionalDataSet.java

java/src/config/Settings.java

java/src/config/InformationGainStats.java

java/src/config/InputDataSetStats.java

java/src/config/Round0.java

java/src/config/SELEXStats.java

java/src/config/ObjectFactory.java

java/src/config/KmerCountStats.java

java/src/config/CrossValidationSetting.java

java/src/config/Model.java

java/src/config/SELEXSequencingConfig.java

java/src/config/SELEXProcessConfig.java

java/src/base/MarkovModelInfo.java

java/src/base/SELEXConfigReader.java

java/src/base/DebugLog.java

java/src/base/MarkovModelOption.java

java/src/base/SequenceComparator.java

java/src/base/ArraysMerger.java

java/src/base/Sequence.java

java/src/base/QuickSort.java

java/src/base/FatalException.java

java/src/base/RegexOption.java

java/src/base/ArraysMergerHeap.java

java/src/base/Util.java

java/src/base/CountObject.java

java/src/base/CountObjectIterator.java

java/src/data/selex/filelist

java/src/jaxb/ThirdPartyLicenseReadme.txt

java/src/jaxb/License.txt

java/src/jaxb/xjc.sh

java/src/test/ZipfileTest.java

java/src/test/Kmer.java

java/src/test/SortingTest.java

java/src/test/MinHeap.java

java/src/test/ExecutorTest.java

java/src/test/IntegerHolder.java

java/src/test/RadixSortTest.java

java/src/test/UtilTest.java

java/src/test/SELEXTest1.java

java/src/test/CountFileReaderTest.java

java/src/test/SELEXTest2.java

java/src/test/SequenceTest.java

java/src/test/MinHeapTest.java

java/src/test/Sorting.java

java/src/test/RegTest.java

java/src/test/MappedMemTest.java

java/src/main/FastQFileScanner.java

java/src/main/SimpleKmerCount.java

java/src/main/SampleDataFileExtractor.java

java/src/main/SELEX.java

java/src/main/SELEXConfigGUI.java

java/src/main/CountFileReader.java

R/onLoad.R R/SELEX.R

vignettes/SELEX.Rnw

man/selex.kmax.Rd man/selex.summary.Rd man/selex.getRound0.Rd man/selex.saveAnnotation.Rd man/selex.countSummary.Rd man/selex.revcomp.Rd man/selex.split.Rd man/selex.sample.Rd man/selex.getAttributes.Rd man/selex.infogain.Rd man/selex.defineSample.Rd man/selex.getSeqfilter.Rd man/selex.mmSummary.Rd man/selex.setwd.Rd man/selex.exampledata.Rd man/selex.loadAnnotation.Rd man/selex.seqfilter.Rd man/selex.mm.Rd man/selex.infogainSummary.Rd man/selex.affinities.Rd man/selex.config.Rd man/selex.fastqPSFM.Rd man/selex.sampleSummary.Rd man/selex.mmProb.Rd man/selex.samplePSFM.Rd man/selex.kmerPSFM.Rd man/selex.run.Rd man/selex.jvmStatus.Rd man/SELEX.Rd man/selex.counts.Rd

inst/doc/SELEX.Rnw

inst/doc/SELEX.pdf inst/doc/SELEX.R

inst/java/selex.jar

inst/extdata/R2.fastq.gz

inst/extdata/config.xml

inst/extdata/R0.fastq.gz

SELEX documentation built on Nov. 8, 2020, 5:22 p.m.