selex.exampledata: Extract example data files

In SELEX: Functions for analyzing SELEX-seq data

Description

A function used to extract the sample files embedded in this package. The package contains 2 FASTQ files (R0.fastq.gz and ExdHox.R2.fastq.gz, and an XML configuration file (config.xml).

Usage

selex.exampledata(outputFolder)

Arguments

outputFolder

Location on disk where the files should be extracted.

Value

Not applicable

See Also

selex.defineSample

Examples

#Initialize the SELEX package
#options(java.parameters="-Xmx1500M")
#library(SELEX) 

# Configure the current session
workDir = file.path(".", "SELEX_workspace")
selex.config(workingDir=workDir,verbose=FALSE, maxThreadNumber= 4)

# Extract sample data from package, including XML database
exampleFiles = selex.exampledata(workDir)

SELEX documentation built on Nov. 8, 2020, 5:22 p.m.