selex.countSummary: Summarize available K-mer count tables

In SELEX: Functions for analyzing SELEX-seq data

Description

This function returns the sample, kmer length, offset, minimum/maximum count, total count, and applied filters for either all count tables or a specified sample in the current working directory.

Usage

selex.countSummary(sample=NULL, displayFilter=FALSE)

Arguments

sample	A sample handle to the sample for which K-mer count statistics should be returned.
displayFilter	Display all applied sequence filter attributes.

Details

Minimum count refers to the lowest count observed for a kmer of length k for a given sample. Total count is the sum of counts over all kmers of length k for a given sample.

Value

selex.countSummary returns a data frame containing the sample, kmer length, offset, minimum/maximum count, total count, and applied filters for all count tables in the current working directory. If sample is provided, the above information is given for the specific sample only.

See Also

selex.counts, selex.summary

Examples

selex.countSummary()

SELEX documentation built on Nov. 8, 2020, 5:22 p.m.