SMAP: A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling

Functions and classes for DNA copy number profiling of array-CGH data

AuthorRobin Andersson <robin.andersson@lcb.uu.se>
Date of publicationNone
MaintainerRobin Andersson <robin.andersson@lcb.uu.se>
LicenseGPL-2
Version1.38.0

View on Bioconductor

Functions

A Man page
A,eta-method Man page
A,grad-method Man page
A,SMAPHMM-method Man page
chromosome Man page
chromosome,SMAPObservations-method Man page
endPosition Man page
endPosition,SMAPObservations-method Man page
GBM Man page
HMM Man page
HMM,SMAPProfile-method Man page
initialize,eta-method Man page
initialize,gaussparam-method Man page
initialize,grad-method Man page
initialize,SMAPHMM-method Man page
initialize,SMAPObservations-method Man page
initialize,SMAPProfile-method Man page
name Man page
name,SMAPObservations-method Man page
name,SMAPProfile-method Man page
name,SMAPProfiles-method Man page
noObservations Man page
noObservations,SMAPObservations-method Man page
noStates Man page
noStates,SMAPHMM-method Man page
observations Man page
observations,SMAPProfile-method Man page
observations,SMAPProfiles-method Man page
P Man page
Phi Man page
Phi,eta-method Man page
Phi,grad-method Man page
Phi,SMAPHMM-method Man page
Pi Man page
Pi,eta-method Man page
Pi,grad-method Man page
Pi,SMAPHMM-method Man page
plot,SMAPObservations,missing-method Man page
plot,SMAPProfile,missing-method Man page
plot,SMAPProfiles,missing-method Man page
P,SMAPProfile-method Man page
Q Man page
Q,SMAPProfile-method Man page
Q,SMAPProfiles-method Man page
reporterId Man page
reporterId,SMAPObservations-method Man page
show,SMAPHMM-method Man page
show,SMAPObservations-method Man page
show,SMAPProfile-method Man page
show,SMAPProfiles-method Man page
smap Man page
SMAPHMM Man page
SMAPHMM-class Man page
SMAPObservations Man page
SMAPObservations-class Man page
[,SMAPObservations-method Man page
SMAPProfile-class Man page
[,SMAPProfile-method Man page
SMAPProfiles-class Man page
[[<-,SMAPProfiles-method Man page
smap,SMAPHMM,SMAPObservations-method Man page
startPosition Man page
startPosition,SMAPObservations-method Man page
value Man page
value,eta-method Man page
value,SMAPObservations-method Man page

Files

SMAP/DESCRIPTION
SMAP/NAMESPACE
SMAP/R
SMAP/R/AllClasses.R SMAP/R/AllGenerics.R SMAP/R/methods-GaussParam.R SMAP/R/methods-SMAPHMM.R SMAP/R/methods-SMAPObservations.R SMAP/R/methods-SMAPProfile.R SMAP/R/methods-eta.R SMAP/R/methods-grad.R
SMAP/build
SMAP/build/vignette.rds
SMAP/data
SMAP/data/GBM.rda
SMAP/inst
SMAP/inst/doc
SMAP/inst/doc/SMAP.R
SMAP/inst/doc/SMAP.Rnw
SMAP/inst/doc/SMAP.pdf
SMAP/man
SMAP/man/GBM.Rd SMAP/man/SMAP-internal.Rd SMAP/man/SMAPHMM-class.Rd SMAP/man/SMAPHMM.Rd SMAP/man/SMAPObservations-class.Rd SMAP/man/SMAPObservations.Rd SMAP/man/SMAPProfile-class.Rd SMAP/man/SMAPProfiles-class.Rd SMAP/man/smap.Rd
SMAP/src
SMAP/src/gradient.c
SMAP/src/gradient.h
SMAP/src/init.c
SMAP/src/overlap.c
SMAP/src/overlap.h
SMAP/src/prob.c
SMAP/src/prob.h
SMAP/src/viterbi.c
SMAP/src/viterbi.h
SMAP/vignettes
SMAP/vignettes/SMAP.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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