SMAP: A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling

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Functions and classes for DNA copy number profiling of array-CGH data

Author
Robin Andersson <robin.andersson@lcb.uu.se>
Date of publication
None
Maintainer
Robin Andersson <robin.andersson@lcb.uu.se>
License
GPL-2
Version
1.38.0

View on Bioconductor

Man pages

GBM
Glioblastoma multiforme array CGH data
smap
smap: A Segmental Maximum A Posteriori Approach to Array-CGH...
SMAPHMM
Constructor for "SMAPHMM" objects
SMAPHMM-class
Class "SMAPHMM": A class to manage HMMs for the SMAP package
SMAP-internal
SMAP-internal
SMAPObservations
Constructor for "SMAPObservations" objects
SMAPObservations-class
Class "SMAPObservations": A class to manage microarray...
SMAPProfile-class
Class "SMAPProfile"
SMAPProfiles-class
Class "SMAPProfiles"

Files in this package

SMAP/DESCRIPTION
SMAP/NAMESPACE
SMAP/R
SMAP/R/AllClasses.R
SMAP/R/AllGenerics.R
SMAP/R/methods-GaussParam.R
SMAP/R/methods-SMAPHMM.R
SMAP/R/methods-SMAPObservations.R
SMAP/R/methods-SMAPProfile.R
SMAP/R/methods-eta.R
SMAP/R/methods-grad.R
SMAP/build
SMAP/build/vignette.rds
SMAP/data
SMAP/data/GBM.rda
SMAP/inst
SMAP/inst/doc
SMAP/inst/doc/SMAP.R
SMAP/inst/doc/SMAP.Rnw
SMAP/inst/doc/SMAP.pdf
SMAP/man
SMAP/man/GBM.Rd
SMAP/man/SMAP-internal.Rd
SMAP/man/SMAPHMM-class.Rd
SMAP/man/SMAPHMM.Rd
SMAP/man/SMAPObservations-class.Rd
SMAP/man/SMAPObservations.Rd
SMAP/man/SMAPProfile-class.Rd
SMAP/man/SMAPProfiles-class.Rd
SMAP/man/smap.Rd
SMAP/src
SMAP/src/gradient.c
SMAP/src/gradient.h
SMAP/src/init.c
SMAP/src/overlap.c
SMAP/src/overlap.h
SMAP/src/prob.c
SMAP/src/prob.h
SMAP/src/viterbi.c
SMAP/src/viterbi.h
SMAP/vignettes
SMAP/vignettes/SMAP.Rnw