GBM: Glioblastoma multiforme array CGH data

In SMAP: A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling

Description

Array CGH data measurements of glioblastoma multiforme sample G24460.

Usage

data(GBM)

Source

Genome wide array CGH data from Diaz de Stahl, T., et al. (2005).

References

Diaz de Stahl, T., et al. (2005) Chromosome 22 tiling-path array-CGH analysis identifies germ-line- and tumor-specific aberrations in patients with glioblastoma multiforme. Genes Chromosomes Cancer 44(2), 161–169

See Also

smap

Examples

data(GBM)
observations <- SMAPObservations(value=as.numeric(GBM[,2]),
                                 chromosome=as.character(GBM[,3]),
                                 startPosition=as.numeric(GBM[,4]),
                                 endPosition=as.numeric(GBM[,5]),
                                 name="G24460",
                                 reporterId=as.character(GBM[,1]))
plot(observations)

Example output

SMAP documentation built on Nov. 8, 2020, 8:26 p.m.