Description Usage Arguments Details Value Author(s) References See Also

View source: R/methods-SMAPHMM.R

A constructor for `SMAPHMM-class`

objects.

1 2 3 |

`noStates` |
The number of hidden states in the HMM (numeric). |

`Phi` |
A Gaussian distribution parameter matrix (numeric). |

`A` |
A |

`Pi` |
A vector of initial probabilities of starting in a certain state (numeric). |

`initTrans` |
Specifies the transition probability between non-equal states (numeric). |

`Phi`

is a `noStates * 2`

matrix that specifies the
paramaters of Gaussian distributions associated with each hidden
state. The first column specifies standard deviations, the second
specifies means.

If `A == NULL`

, `initTrans`

specifies the transition
probability between states `i`

and `j`

in `1:noStates`

,
such that `i != j`

. Only used if ```
A ==
NULL
```

. `initTrans * noStates`

must be smaller than (or equal
to) 1.

An object of class `SMAPHMM-class`

.

Robin Andersson, [email protected]

Andersson, R., Bruder, C. E. G., Piotrowski, A., Menzel, U., Nord, H., Sandgren, J., Hvidsten, T. R., Diaz de Stahl, T., Dumanski, J. P., Komorowski, J., A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling, submitted

`smap`

,
`SMAPHMM-class`

,
`SMAPObservations-class`

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