SMAPProfiles-class: Class "SMAPProfiles"

In SMAP: A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling

Description

Holds results from running smap.

Objects from the Class

Objects are not intended to be created directly but as a result from running smap.

Slots

.Data:

Object of class "list" A list of objects of class SMAPProfile-class.

name:

Object of class "character" The name of the object.

Extends

Class "list", from data part. Class "vector", by class "list".

Methods

Q

signature(object = "SMAPProfiles"): Returns the optimal state sequence of the list elements.

observations

signature(object = "SMAPProfiles"): Returns the observations of the list elements.

name

signature(object = "SMAPProfiles"): Returns the name of the profile.

plot

signature(x = "SMAPProfiles", y = "missing"): A plot method for the result profiles.

Author(s)

Robin Andersson, [e-mail]

References

Andersson, R., Bruder, C. E. G., Piotrowski, A., Menzel, U., Nord, H., Sandgren, J., Hvidsten, T. R., Diaz de Stahl, T., Dumanski, J. P., Komorowski, J., A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling, submitted

See Also

smap, SMAPProfile-class

SMAP documentation built on Nov. 8, 2020, 8:26 p.m.