SMAPProfiles-class: Class "SMAPProfiles"

Description Objects from the Class Slots Extends Methods Author(s) References See Also

Description

Holds results from running smap.

Objects from the Class

Objects are not intended to be created directly but as a result from running smap.

Slots

.Data:

Object of class "list" A list of objects of class SMAPProfile-class.

name:

Object of class "character" The name of the object.

Extends

Class "list", from data part. Class "vector", by class "list".

Methods

Q

signature(object = "SMAPProfiles"): Returns the optimal state sequence of the list elements.

observations

signature(object = "SMAPProfiles"): Returns the observations of the list elements.

name

signature(object = "SMAPProfiles"): Returns the name of the profile.

plot

signature(x = "SMAPProfiles", y = "missing"): A plot method for the result profiles.

Author(s)

Robin Andersson, robin.andersson@lcb.uu.se

References

Andersson, R., Bruder, C. E. G., Piotrowski, A., Menzel, U., Nord, H., Sandgren, J., Hvidsten, T. R., Diaz de Stahl, T., Dumanski, J. P., Komorowski, J., A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling, submitted

See Also

smap, SMAPProfile-class



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