API for SMAP
A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling
| Global functions | |
|---|---|
| .onLoad | Source code |
| A | Man page |
| A,SMAPHMM-method | Man page |
| A,eta-method | Man page |
| A,grad-method | Man page |
| GBM | Man page |
| HMM | Man page |
| HMM,SMAPProfile-method | Man page |
| P | Man page |
| P,SMAPProfile-method | Man page |
| Phi | Man page |
| Phi,SMAPHMM-method | Man page |
| Phi,eta-method | Man page |
| Phi,grad-method | Man page |
| Pi | Man page |
| Pi,SMAPHMM-method | Man page |
| Pi,eta-method | Man page |
| Pi,grad-method | Man page |
| Q | Man page |
| Q,SMAPProfile-method | Man page |
| Q,SMAPProfiles-method | Man page |
| SMAPHMM | Man page Source code |
| SMAPHMM-class | Man page |
| SMAPObservations | Man page Source code |
| SMAPObservations-class | Man page |
| SMAPProfile | Source code |
| SMAPProfile-class | Man page |
| SMAPProfiles-class | Man page |
| [,SMAPObservations-method | Man page |
| [,SMAPProfile-method | Man page |
| [[<-,SMAPProfiles-method | Man page |
| chromosome | Man page |
| chromosome,SMAPObservations-method | Man page |
| endPosition | Man page |
| endPosition,SMAPObservations-method | Man page |
| eta | Source code |
| gaussparam | Source code |
| grad | Source code |
| initialize,SMAPHMM-method | Man page |
| initialize,SMAPObservations-method | Man page |
| initialize,SMAPProfile-method | Man page |
| initialize,eta-method | Man page |
| initialize,gaussparam-method | Man page |
| initialize,grad-method | Man page |
| name | Man page |
| name,SMAPObservations-method | Man page |
| name,SMAPProfile-method | Man page |
| name,SMAPProfiles-method | Man page |
| noObservations | Man page |
| noObservations,SMAPObservations-method | Man page |
| noStates | Man page |
| noStates,SMAPHMM-method | Man page |
| observations | Man page |
| observations,SMAPProfile-method | Man page |
| observations,SMAPProfiles-method | Man page |
| plot,SMAPObservations,missing-method | Man page |
| plot,SMAPProfile,missing-method | Man page |
| plot,SMAPProfiles,missing-method | Man page |
| reporterId | Man page |
| reporterId,SMAPObservations-method | Man page |
| show,SMAPHMM-method | Man page |
| show,SMAPObservations-method | Man page |
| show,SMAPProfile-method | Man page |
| show,SMAPProfiles-method | Man page |
| smap | Man page |
| smap,SMAPHMM,SMAPObservations-method | Man page |
| startPosition | Man page |
| startPosition,SMAPObservations-method | Man page |
| value | Man page |
| value,SMAPObservations-method | Man page |
| value,eta-method | Man page |
