Reactome.Symbol.Igraph: An Igraph network for REACTOME with nodes as gene symbols
In SMITE: Significance-based Modules Integrating the Transcriptome and Epigenome
Description
Usage
Format
Details
Value
Source
References
Examples
Description
This is an Igraph network that was created using the REACTOME protein-protein
interaction database.
Usage
1
data("Reactome.Symbol.Igraph")
Format
An igraph object with 5770 nodes and 114288 edges
- nodes
gene names as gene symbols
- edges
paired genes that interact
Details
The provided igraph file was created using the igraph package and the
interaction file provided from the reference.
Value
An Igraph network based off of REACTOME interactions
Source
REACTOME
References
http://www.reactome.org/pages/download-data/
Examples
1
2
data(Reactome.Symbol.Igraph)
head(igraph::V(REACTOME))
SMITE documentation built on Nov. 8, 2020, 5:14 p.m.
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Description Usage Format Details Value Source References Examples
Description
This is an Igraph network that was created using the REACTOME protein-protein interaction database.
Usage
1 | data("Reactome.Symbol.Igraph")
|
Format
An igraph object with 5770 nodes and 114288 edges
- nodes
gene names as gene symbols
- edges
paired genes that interact
Details
The provided igraph file was created using the igraph package and the interaction file provided from the reference.
Value
An Igraph network based off of REACTOME interactions
Source
REACTOME
References
http://www.reactome.org/pages/download-data/
Examples
1 2 | data(Reactome.Symbol.Igraph)
head(igraph::V(REACTOME))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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