hg19_gene_bed: A bed file annotating Refseq genes for the hg19 genome build

In SMITE: Significance-based Modules Integrating the Transcriptome and Epigenome

Description

A gene anntation BED file containing columns for RefSeq name and Gene Symbol

Usage

data("hg19_genes_bed")

Format

A data frame with 41633 observations on the following 6 variables.

column 1

a character vector for chromosome

column 2

an integer vector for start position

column 3

an integer vector for end position

column 4

an character vector for RefSeq gene names

column 5

an character vector for Gene Symbol names

column 6

an character vector for strand

Details

A BED files taken from the table browser.

Value

A dataframe in BED format (chromosome, start, end) with additional columns for gene name as Refseq and gene symbol and strand.

Source

Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D, Kent WJ. The UCSC Table Browser data retrieval tool. Nucleic Acids Res. 2004 Jan 1;32 (Database issue):D493-6.

References

http://genome.ucsc.edu/

Examples

data(hg19_genes_bed)

SMITE documentation built on Nov. 8, 2020, 5:14 p.m.