A toy dataset ofcurated RNA-seq to test within SMITE
A toy dataset of pre-cleaned gene expression data from RNA-seq. The file is effect and p-value with gene names as rownames.
A data frame with 20819 observations on the following 2 variables.
a character vector specifying gene
an numeric vector specifying effect (log fold change)
a numeric vector with a two sided p-value from DESeq analysis
This gene expression dataset is a randomized version of the Toxoplasma dataset used to benchmark SMITE. It no longer has NAs or p-values=0. Gene names were converted to gene symbols.
A dataframe with rownames as genes in Refseq format and columns for effects and pvalues derived from negative binomial testing of DESeq normalized values from RNA-seq.
Manuscript in preparation. Please see https://github.com/GreallyLab for more details.