extractModules: View specific modules within a PvalueAnnotation
In SMITE: Significance-based Modules Integrating the Transcriptome and Epigenome

Having identfied modules within a Pvalue annotation, this function allows the user to display 1 or more of the module genes.

1	extractModules(pvalue_annotation, which_module = NULL)

`pvalue_annotation`	An S4 object of class PvalueAnnotation for which Spinglass or BioNet has already been run.
`which_module`	A numeric vector specifying one or more module to display

A list with each element containing the requested modules

N. Ari Wijetunga

plotModule runGOseq extractGOseq runSpinglass runBioNet

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data(test_annotation_score_data)

extractModules(pvalue_annotation=test_annotation, which_module=1)

SMITE documentation built on Nov. 8, 2020, 5:14 p.m.

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