View specific modules within a PvalueAnnotation

Description

Having identfied modules within a Pvalue annotation, this function allows the user to display 1 or more of the module genes.

Usage

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extractModules(pvalue_annotation, which_module = NULL)

Arguments

pvalue_annotation

An S4 object of class PvalueAnnotation for which Spinglass or BioNet has already been run.

which_module

A numeric vector specifying one or more module to display

Value

A list with each element containing the requested modules

Author(s)

N. Ari Wijetunga

See Also

plotModule runGOseq extractGOseq runSpinglass runBioNet

Examples

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data(test_annotation_score_data)

extractModules(pvalue_annotation=test_annotation, which_module=1)

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