dataFrame-methods: Construct a data.frame from genomic data for plotting

Description Methods

Description

Construct a data.frame of genomic data (log R ratios and BAFs) from a RangedSummarizedExperiment with markers in the interval given by the GRanges object.

Methods

signature(range = "GRanges", data = "gSet")

The argument range is often intervals from a hidden Markov model fit to the genomic data in the data object. gSet-derived classes contain assay data on copy number and allele frequencies.

signature(range = "GRanges", data = "RangedSummarizedExperiment")

The argument range is often intervals from a hidden Markov model fit to the genomic data in the data object. The RangedSummarizedExperiment is assumed to contain log R ratio (lrr) and B allele frequency (baf) assays.


SNPchip documentation built on May 2, 2018, 6:06 p.m.