getCytoband: getCytoband
In SNPchip: Visualizations for copy number alterations
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/idiogram-functions.R
Description
This function generates a data.frame with the
respective cytoband names, chromosomes, Giemsa stain, and the start and
end positions. These tables can then be used to plot chromosome
idiograms. Currently, cytoband annotation for UCSC genome builds hg18
and hg19 are supported.
Usage
1
Arguments
build
A character string indicating UCSC build ("hg18" or "hg19").
Value
data.frame
Author(s)
Michael Considine
See Also
Examples
1
2
3
cytoband <- getCytoband("hg19")
cytoband <- cytoband[cytoband$chr == "chr1", ]
plotIdiogram(1, "hg18", cytoband=cytoband, cex.axis=0.6)
SNPchip documentation built on Oct. 31, 2019, 2:07 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/idiogram-functions.R
Description
This function generates a data.frame with the
respective cytoband names, chromosomes, Giemsa stain, and the start and
end positions. These tables can then be used to plot chromosome
idiograms. Currently, cytoband annotation for UCSC genome builds hg18
and hg19 are supported.
Usage
1 |
Arguments
build |
A character string indicating UCSC build ("hg18" or "hg19"). |
Value
data.frame
Author(s)
Michael Considine
See Also
Examples
1 2 3 | cytoband <- getCytoband("hg19")
cytoband <- cytoband[cytoband$chr == "chr1", ]
plotIdiogram(1, "hg18", cytoband=cytoband, cex.axis=0.6)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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