Files in SNPhood
SNPhood: Investigate, quantify and visualise the epigenomic neighbourhood of SNPs using NGS data
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/SNPhood.o.rda
R/core.R
R/misc.R
R/SNPhood.R
R/visualize.R
R/zzz.R
R/DataClasses.R
man-roxygen/plotGraph.R
man-roxygen/readGroupColors.R
man-roxygen/SNPhood.R
man-roxygen/regions.R
man-roxygen/normalize.R
man-roxygen/dataset.R
man-roxygen/object.R
man-roxygen/fileToPlot.R
man-roxygen/plotRegionBoundaries.R
man-roxygen/sizePoints.R
man-roxygen/signThreshold.R
man-roxygen/plotRegionLabels.R
man-roxygen/returnOnlyPlotNotObject.R
man-roxygen/colorPalette.R
man-roxygen/ggplotReturn.R
man-roxygen/verbose_FALSE.R
man-roxygen/maxWidthLabels.R
man-roxygen/plotEndPos.R
man-roxygen/nClusters.R
man-roxygen/printPlot.R
man-roxygen/datasets.R
man-roxygen/ylim.R
man-roxygen/plotStartPos.R
man-roxygen/verbose_TRUE.R
man-roxygen/plotChr.R
man-roxygen/readGroup.R
man-roxygen/region.R
man-roxygen/readGroups.R
vignettes/workflow.Rmd
vignettes/IntroductionToSNPhood.Rmd
vignettes/figs/SNPhood_workflow_simple.png
vignettes/figs/genotype.png
vignettes/figs/inputNormalizationScheme.png
vignettes/figs/inputFileFlexibility.png
vignettes/figs/Logo.png
vignettes/figs/SNPhood_workflow_detailed.png
vignettes/figs/normDetails.png
vignettes/figs/Input.png
vignettes/figs/Comparison.png
vignettes/figs/readFiltering.png
man/renameBins.Rd
man/deleteDatasets.Rd
man/annotation-methods.Rd
man/plotGenotypesPerSNP.Rd
man/annotationReadGroups.Rd
man/convertToAllelicFractions.Rd
man/annotationBins2.Rd
man/testForAllelicBiases.Rd
man/deleteReadGroups.Rd
man/plotAndSummarizeAllelicBiasTest.Rd
man/SNPhood.o.Rd
man/analyzeSNPhood.Rd
man/plotRegionCounts.Rd
man/renameDatasets.Rd
man/annotationDatasets.Rd
man/associateGenotypes.Rd
man/changeObjectIntegrityChecking.Rd
man/annotationRegions.Rd
man/renameRegions.Rd
man/counts-method.Rd
man/plotAllelicBiasResults.Rd
man/plotAndCalculateCorrelationDatasets.Rd
man/parameters-methods.Rd
man/getDefaultParameterList.Rd
man/plotFDRResults.Rd
man/mergeReadGroups.Rd
man/deleteRegions.Rd
man/renameReadGroups.Rd
man/annotationBins.Rd
man/enrichment-methods.Rd
man/collectFiles.Rd
man/plotBinCounts.Rd
man/results.Rd
man/readGroups-methods.Rd
man/plotAndClusterMatrix.Rd
man/regions-methods.Rd
man/SNPhood-class.Rd
man/plotAndCalculateWeakAndStrongGenotype.Rd
man/plotClusterAverage.Rd
man/bins-methods.Rd
man/plotGenotypesPerCluster.Rd
man/SNPhood.Rd
man/datasets-methods.Rd
man/plotAllelicBiasResultsOverview.Rd
inst/doc/IntroductionToSNPhood.R
inst/doc/IntroductionToSNPhood.html
inst/doc/workflow.Rmd
inst/doc/workflow.html
inst/doc/workflow.R
inst/doc/IntroductionToSNPhood.Rmd
