renameReadGroups: Rename read groups.

In SNPhood: SNPhood: Investigate, quantify and visualise the epigenomic neighbourhood of SNPs using NGS data

Description

renameReadGroups renames a set of read groups from a SNPhood object.

Usage

renameReadGroups(SNPhood.o, newReadGroupsMapping, verbose = TRUE)

Arguments

SNPhood.o	Object of class SNPhood
newReadGroupsMapping	Named list. Named list. For clarity of mapping, the names of the list must be the currently defined read group names, and the values of each element the corresponding new ones.
verbose	Logical(1). Default TRUE. Should the verbose mode (i.e., diagnostic messages during execution of the script) be enabled?

Value

an object of class SNPhood with the requested read groups being renamed.

See Also

renameBins, renameDatasets, renameRegions

Examples

data(SNPhood.o, package="SNPhood")
mapping = list("a", "b", "c")
names(mapping) = annotationReadGroups(SNPhood.o)
SNPhood_mod.o = renameReadGroups (SNPhood.o, mapping)

SNPhood documentation built on Nov. 8, 2020, 6:22 p.m.