renameRegions: Rename regions.

In SNPhood: SNPhood: Investigate, quantify and visualise the epigenomic neighbourhood of SNPs using NGS data

Description

renameRegions renames regions from a SNPhood object.

Usage

renameRegions(SNPhood.o, newRegionsMapping, verbose = TRUE)

Arguments

SNPhood.o	Object of class SNPhood
newRegionsMapping	Named list. For clarity of mapping, the names of the list must be the currently defined region names, and the values of each element the corresponding new ones.
verbose	Logical(1). Default TRUE. Should the verbose mode (i.e., diagnostic messages during execution of the script) be enabled?

Value

An object of class SNPhood with the requested regions being renamed

See Also

renameBins, renameDatasets, renameReadGroups

Examples

data(SNPhood.o, package="SNPhood")
mapping = as.list(paste0(annotationRegions(SNPhood.o),".newName"))
names(mapping) = annotationRegions(SNPhood.o)
SNPhood_mod.o = renameRegions(SNPhood.o, mapping)

SNPhood documentation built on Nov. 8, 2020, 6:22 p.m.