IGVclear: Clear IGV tracks loaded.

In SRAdb: A compilation of metadata from NCBI SRA and tools

Description

Clear IGV tracks loaded in the current IGV.

Usage

IGVclear(sock)

Arguments

sock	A socket connection to IGV.

Author(s)

Jack Zhu <[e-mail]>

References

http://www.broadinstitute.org/igv/PortCommands

See Also

startIGV, IGVload, IGVgoto

Examples

  ## Not run: 
  ## Create a file list from example bam files in the package
  exampleBams = file.path(system.file('extdata',package='SRAdb'),
    dir(system.file('extdata',package='SRAdb'),pattern='bam$'))
  
  ##Create a socket connection to IGV
  sock <- IGVsocket()
  ## Load the bam files into IGV
  IGVload(sock, exampleBams)

  ## Clear loaded tracks in the current IGV
  IGVclear(sock)
  
## End(Not run)

SRAdb documentation built on Nov. 8, 2020, 6:49 p.m.