IGVsort: Sort an alignment track by the specified option.

Description Usage Arguments Author(s) References See Also Examples

View source: R/IGVapi.R

Description

Using the remote command port of IGV, Sorts an alignment track by the specified option. Recognized values for the option parameter are: base, position, strand, quality, sample, and readGroup.

Usage

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IGVsort(sock, option)

Arguments

sock

A socket connection to IGV.

option

Recognized values for the option parameter are: base, position, strand, quality, sample, and readGroup.

Author(s)

Jack Zhu<zhujack@mail.nih.gov>

References

http://www.broadinstitute.org/igv/PortCommands

See Also

startIGV, IGVload

Examples

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  ## Not run: 
  sock <- IGVsocket()
  IGVsort(sock, 'position')
  IGVsort(sock, 'base')
  IGVsort(sock, 'sample')
  
## End(Not run)

SRAdb documentation built on April 29, 2020, 5:22 a.m.