SigCheck
Check a gene signature's prognostic performance against random signatures, known signatures, and permuted data/metadata

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70
Source code
9
Man pages
11
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SigCheck: Check a gene signature's prognostic performance against random signatures, known signatures, and permuted data/metadata
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API

API for SigCheck
Check a gene signature's prognostic performance against random signatures, known signatures, and permuted data/metadata

Global functions
.sigCheckClassifierNull Source code
.sigCheckClassifierRandom Source code
.sigCheckClassifierSurvival Source code
.sigCheckClassifyScore Source code
.sigCheckHigh Source code
.sigCheckKnownClassifier Source code
.sigCheckKnownSurvival Source code
.sigCheckNA Source code
.sigCheckPCA1 Source code
.sigCheckPermuted Source code
.sigCheckPheno Source code
.sigCheckPlotClassifierKM Source code
.sigCheckPlotKM Source code
.sigCheckPval Source code Source code
.sigCheckSignature Source code
.sigCheckSurvival Source code
.sigCheckSurvivalCategories Source code
.sigCheckSurvivalClassificationScore Source code
.sigCheckSurvivalClassify Source code
.sigCheckSurvivalConfuse Source code
.sigCheckSurvivalRandom Source code
SigCheck Man page
SigCheck-package Man page
SigCheckObject Man page
SigCheckObject-class Man page
annotation,SigCheckObject-method Man page
checkType,SigCheckObject-method Man page
classes,SigCheckObject-method Man page
classifier,SigCheckObject-method Man page
classifierMethod,SigCheckObject-method Man page
classifyResults Man page
confusion,SigCheckObject-method Man page
knownSignatures Man page
modePerformance,SigCheckObject-method Man page
modeVal,SigCheckObject-method Man page
nkiResults Man page
resultsNKI Man page
sigCheck Man page Source code
sigCheckAll Man page Source code
sigCheckClassifier Source code
sigCheckKnown Man page Source code
sigCheckPermuted Man page Source code
sigCheckPlot Man page Source code
sigCheckPlotClassifier Source code
sigCheckPlotSurvival Source code
sigCheckRandom Man page Source code
sigCheckSurvival Source code
sigPerformance,SigCheckObject-method Man page
signature,SigCheckObject-method Man page
survival,SigCheckObject-method Man page
survivalClassificationScore,SigCheckObject-method Man page
survivalConfusionMatrix,SigCheckObject-method Man page
survivalMethod,SigCheckObject-method Man page
survivalPval,SigCheckObject-method Man page
survivalScores,SigCheckObject-method Man page
survivalTrainingClassificationScore,SigCheckObject-method Man page
survivalTrainingConfusionMatrix,SigCheckObject-method Man page
survivalTrainingPval,SigCheckObject-method Man page
survivalTrainingScores,SigCheckObject-method Man page
survivalType,SigCheckObject-method Man page
threshold,SigCheckObject-method Man page
timeUnits,SigCheckObject-method Man page
validationSamples,SigCheckObject-method Man page
SigCheck documentation built on Nov. 8, 2020, 6:38 p.m.

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