API for SomatiCA
SomatiCA: identifying, characterizing, and quantifying somatic copy number aberrations from cancer genome sequencing
| Global functions | |
|---|---|
| GCbiasRemoval | Man page |
| GCcontent | Man page |
| GCcount | Man page |
| MergeSegment | Man page |
| SomatiCA | Man page |
| SomatiCA-package | Man page |
| SomatiCAFormat | Man page |
| SomatiCAFormat,GRanges-method | Man page |
| SomatiCAFormat,character-method | Man page |
| SomatiCAFormat,data.frame-method | Man page |
| SomatiCAFormat-methods | Man page |
| SomatiCAUsersGuide | Man page |
| SomatiCApipe | Man page |
| admixtureRate | Man page |
| collapse | Man page |
| copynumberCorrected | Man page |
| denoise | Man page |
| larsCBSsegment | Man page |
| plotSegment | Man page |
| plotSubclonality | Man page |
| refineSegment | Man page |
| segmentGCbiasRemoval | Man page |
| segwithratio | Man page |
| somaticRatio | Man page |
| subclonality | Man page |
