SomatiCAFormat-methods: ~~ Methods for Function 'SomatiCAFormat' in Package...
In SomatiCA: SomatiCA: identifying, characterizing, and quantifying somatic copy number aberrations from cancer genome sequencing
Description
Convert a data frame or read a file into SomatiCA input format. Remove missing values from input, check validity of data type and convert it into SomatiCA input format, which is a GRanges object.
Methods
signature(data = "character")-
Filename.
signature(data = "data.frame")-
Data frame with 7 column (tumor sample with control), including seqnames, start, zygosity, tCount, LAF, tCountN, germLAF.
signature(data = "GRanges")-
A GRange object.
SomatiCA documentation built on Oct. 5, 2016, 4:18 a.m.
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Description
Convert a data frame or read a file into SomatiCA input format. Remove missing values from input, check validity of data type and convert it into SomatiCA input format, which is a GRanges object.
Methods
signature(data = "character")-
Filename.
signature(data = "data.frame")-
Data frame with 7 column (tumor sample with control), including seqnames, start, zygosity, tCount, LAF, tCountN, germLAF.
signature(data = "GRanges")-
A GRange object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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